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Tetragonal Maltose Binding Protein in the presence of gold

Analyse Tetragonal Maltose Binding Protein in the presence of gold in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7MQ6
Type: protein
Length: 373 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.372
Source: Escherichia coli
Molecule: Maltodextrin-binding protein
UniProt: A0A778V697
Ligands: BGC, GLC, AU, CL, SO4
Pockets: 3 · best druggability 0.73

Structure

x-ray diffraction · resolution 2.372 · 1 distinct chain · 46% helix, 21% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Maltodextrin-binding protein	protein	373	46% helix, 21% strand	A0A778V697

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · chains A
GLC · alpha-D-glucopyranose · sugar · chains A
AU · Gold ion · metal · chains A
CL · Chloride ion · ion · 8 copies · chains A
SO4 · Sulfate ion · ion · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	373	0.73	0.84	34	BGC, GLC
2	51	0.36	0.80	15	empty
3	86	0.33	0.74	18	CL

Compared structures

7MQ6 · Tetragonal maltose binding protein in the presence of gold · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A778V697
Elsewhere: RCSB PDB 7MQ6 · PDBe 7MQ6 · UniProt A0A778V697

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