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The structure of Bacteroides plebeius L-galactose dehydrogenase

Analyse The structure of Bacteroides plebeius L-galactose dehydrogenase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7LH6
Type: protein
Length: 571 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.85
Source: Bacteroides plebeius
Molecule: L-galactose dehydrogenase
UniProt: B5CY82
Pockets: 4 · best druggability 0.84

Structure

x-ray diffraction · resolution 2.85 · 2 distinct chains · 43% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
B	L-galactose dehydrogenase	protein	285	44% helix, 15% strand	B5CY82
A	L-galactose dehydrogenase	protein	286	43% helix, 14% strand	B5CY82

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1111	0.84	0.85	92	empty
2	71	0.37	0.78	15	empty
3	74	0.33	0.75	13	empty
4	52	0.29	0.75	13	empty

Interfaces

1 interface between chains.

B–A · 1149 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

7LH6 · The structure of bacteroides plebeius L-galactose dehydrogenase · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B5CY82
Elsewhere: RCSB PDB 7LH6 · PDBe 7LH6 · UniProt B5CY82

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