Research workbench
NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis in complex with NAD+
Analyse NMR Structure of a tRNA 2'-phosphotransferase from Runella slithyformis in… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7KW9
- Type
- protein
- Length
- 178 residues
- Chains
- 1
- Method
- solution nmr
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- NOT
- Source
- Runella slithyformis
- Molecule
- tRNA 2'-phosphotransferase
- EC
- 2.7.1.160
- Ligands
- NAD
- Pockets
- 1 · best druggability 0.36
Structure
solution nmr · resolution NOT · 1 distinct chain · 35% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | tRNA 2'-phosphotransferase (EC 2.7.1.160) | protein | 178 | 35% helix, 17% strand | — |
Ligands and binding sites
- NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 109 | 0.36 | 0.74 | 23 | NAD |
Compared structures
- 7KW9 · NMR structure of a tRNA 2'-phosphotransferase from runella slithyformis in complex with… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7KW9 · PDBe 7KW9
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