Research workbench
Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the J36 immobile Holliday junction with R3 symmetry
Analyse Self-assembly of a 3D DNA crystal lattice (4x6 duplex version) containing the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7JS2
- Type
- DNA
- Length
- 42 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.058
- Molecule
- DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*GP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3'); DNA…
Structure
x-ray diffraction · resolution 3.058 · 4 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | DNA (5'-D(*GP*AP*GP*CP*AP*GP*AP*CP*GP*TP*GP*AP*CP*GP*AP*CP*AP*CP*TP*CP*A)-3') | dna | 21 | — | — |
| C | DNA (5'-D(*TP*CP*TP*GP*AP*GP*TP*G)-3') | dna | 8 | — | — |
| D | DNA (5'-D(P*CP*GP*TP*CP*TP*GP*C)-3') | dna | 7 | — | — |
| A | DNA (5'-D(P*TP*CP*GP*TP*CP*A)-3') | dna | 6 | — | — |
Interfaces
5 interfaces between chains.
- B–D · 355 Ų buried · 34 hydrogen bonds · nucleic-nucleic
- B–C · 287 Ų buried · 25 hydrogen bonds · nucleic-nucleic
- B–A · 278 Ų buried · 26 hydrogen bonds · nucleic-nucleic
- C–A · 109 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- D–A · 104 Ų buried · 4 hydrogen bonds · nucleic-nucleic
Compared structures
- 7JS2 · Self-assembly of a 3D DNA crystal lattice (4X6 duplex version) containing the J36… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 7JS2 · PDBe 7JS2
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