Research workbench
Crystal structure of the complex formed by Wolbachia cytoplasmic incompatibility factors CidAwMel(ST) and CidBND1-ND2 from wPip(Pel)
Analyse Crystal structure of the complex formed by Wolbachia cytoplasmic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7FIW
- Type
- protein
- Length
- 1,151 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.16
- Source
- Wolbachia endosymbiont of Culex pipiens; Wolbachia endosymbiont of Culex…
- Molecule
- ULP_PROTEASE domain-containing protein; bacteria factor 4,CidA I(Zeta/1) protein
- UniProt
- B3CP63, Q73HD5, A0A5B8WHG9
- Pockets
- 17 · best druggability 0.84
Structure
x-ray diffraction · resolution 2.16 · 2 distinct chains · 47% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ULP_PROTEASE domain-containing protein | protein | 740 | 36% helix, 26% strand | B3CP63 |
| B | bacteria factor 4,CidA I(Zeta/1) protein | protein | 411 | 67% helix, 3% strand | Q73HD5, A0A5B8WHG9 |
Pockets
17 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 637 | 0.84 | 0.89 | 95 | empty |
| 2 | 339 | 0.79 | 0.89 | 49 | empty |
| 3 | 227 | 0.63 | 0.82 | 26 | empty |
| 4 | 147 | 0.63 | 0.86 | 21 | empty |
| 5 | 113 | 0.54 | 0.83 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 2625 Ų buried · 56 hydrogen bonds · protein-protein
Compared structures
- 7FIW · Crystal structure of the complex formed by wolbachia cytoplasmic incompatibility factors… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B3CP63
- Every structure of UniProt Q73HD5
- Every structure of UniProt A0A5B8WHG9
- Elsewhere: RCSB PDB 7FIW · PDBe 7FIW · UniProt B3CP63 · UniProt Q73HD5 · UniProt A0A5B8WHG9
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.