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Structure of mumps virus nucleoprotein without C-arm
Analyse Structure of mumps virus nucleoprotein without C-arm in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EXA
- Type
- protein + RNA
- Length
- 380 residues
- Chains
- 2
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.9
- Source
- Escherichia coli; Mumps virus (strain Jeryl-Lynn)
- Molecule
- Nucleoprotein; RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3')
- UniProt
- Q77IS8
- Pockets
- 5 · best druggability 0.61
Structure
electron microscopy · resolution 2.9 · 2 distinct chains · 59% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleoprotein | protein | 374 | 59% helix, 5% strand | Q77IS8 |
| B | RNA (5'-R(P*UP*UP*UP*UP*UP*U)-3') | rna | 6 | — | — |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 266 | 0.61 | 0.80 | 41 | empty |
| 2 | 298 | 0.56 | 0.76 | 35 | empty |
| 3 | 99 | 0.38 | 0.75 | 21 | empty |
| 4 | 79 | 0.37 | 0.77 | 13 | empty |
| 5 | 81 | 0.35 | 0.76 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 747 Ų buried · 15 hydrogen bonds · protein-nucleic
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q77IS8
- Elsewhere: RCSB PDB 7EXA · PDBe 7EXA · UniProt Q77IS8
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