Research workbench
Cryo-EM structure of VCCN1 in lipid nanodisc
Analyse Cryo-EM structure of VCCN1 in lipid nanodisc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EK2
- Type
- protein
- Length
- 341 residues
- Chains
- 1
- Method
- electron microscopy
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.7
- Source
- Malus domestica
- Molecule
- Bestrophin-like protein
- UniProt
- A0A498JCY7
- Pockets
- 6 · best druggability 0.53
Structure
electron microscopy · resolution 2.7 · 1 distinct chain · 78% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Bestrophin-like protein | protein | 341 | 78% helix, 0% strand | A0A498JCY7 |
Pockets
6 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.53 | 0.80 | 23 | empty |
| 2 | 76 | 0.34 | 0.75 | 13 | empty |
| 3 | 71 | 0.28 | 0.72 | 17 | empty |
| 4 | 56 | 0.27 | 0.73 | 13 | empty |
| 5 | 59 | 0.26 | 0.72 | 12 | empty |
Compared structures
- 7EK2 · Cryo-EM structure of VCCN1 in lipid nanodisc · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A498JCY7
- Elsewhere: RCSB PDB 7EK2 · PDBe 7EK2 · UniProt A0A498JCY7
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