Research workbench
Crystal structure of a feruloyl esterase LP_0796 from Lactobacillus plantarum
Analyse Crystal structure of a feruloyl esterase LP_0796 from Lactobacillus plantarum in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 7EBO
- Type
- protein
- Length
- 484 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Lactiplantibacillus plantarum WCFS1
- Molecule
- Carboxylesterase
- EC
- 3.1.1.1
- UniProt
- F9UM18
- Ligands
- SO4
- Pockets
- 4 · best druggability 0.78
Structure
x-ray diffraction · resolution 2.5 · 2 distinct chains · 50% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Carboxylesterase (EC 3.1.1.1) | protein | 242 | 52% helix, 15% strand | F9UM18 |
| B | Carboxylesterase (EC 3.1.1.1) | protein | 242 | 48% helix, 14% strand | F9UM18 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 505 | 0.78 | 0.85 | 45 | empty |
| 2 | 111 | 0.68 | 0.91 | 16 | empty |
| 3 | 209 | 0.62 | 0.82 | 28 | empty |
| 4 | 115 | 0.58 | 0.85 | 34 | empty |
Interfaces
1 interface between chains.
- A–B · 1648 Ų buried · 17 hydrogen bonds · protein-protein
Compared structures
- 7EBO · Crystal structure of a feruloyl esterase LP_0796 from lactobacillus plantarum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F9UM18
- Elsewhere: RCSB PDB 7EBO · PDBe 7EBO · UniProt F9UM18
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.