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X-ray structure of Clostridium perfringens sortase C with the C-terminal cell wall sorting motif.

Analyse X-ray structure of Clostridium perfringens sortase C with the C-terminal cell… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 7D6T
Type: protein
Length: 373 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.68
Source: Clostridium perfringens (strain SM101 / Type A)
Molecule: Sortase family protein
UniProt: Q0SWL7
Pockets: 5 · best druggability 0.72

Structure

x-ray diffraction · resolution 1.68 · 2 distinct chains · 29% helix, 33% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sortase family protein	protein	188	29% helix, 32% strand	Q0SWL7
B	Sortase family protein	protein	185	29% helix, 34% strand	Q0SWL7

Pockets

5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	530	0.72	0.81	62	empty
2	101	0.36	0.74	15	empty
3	92	0.35	0.74	16	empty
4	54	0.30	0.76	13	empty
5	51	0.26	0.74	16	empty

Interfaces

1 interface between chains.

A–B · 595 Å² buried · 6 hydrogen bonds · protein-protein

Compared structures

7D6T · X-ray structure of clostridium perfringens sortase C with the C- terminal cell wall… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q0SWL7
Elsewhere: RCSB PDB 7D6T · PDBe 7D6T · UniProt Q0SWL7

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