Research workbench
Streptococcal surface adhesin - CshB NR2
Analyse Streptococcal surface adhesin - CshB NR2 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6YZG
- Type
- protein
- Length
- 279 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.4
- Source
- Streptococcus gordonii (strain Challis / ATCC 35105 / BCRC 15272 / CH1 / DL1 /…
- Molecule
- Surface-associated protein CshB
- UniProt
- A8AXC5
- Pockets
- 4 · best druggability 0.83
Structure
x-ray diffraction · resolution 1.4 · 1 distinct chain · 15% helix, 15% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Surface-associated protein CshB | protein | 279 | 15% helix, 15% strand | A8AXC5 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 962 | 0.83 | 0.84 | 74 | empty |
| 2 | 135 | 0.37 | 0.72 | 24 | empty |
| 3 | 64 | 0.32 | 0.76 | 20 | empty |
| 4 | 52 | 0.28 | 0.75 | 11 | empty |
Compared structures
- 6YZG · Streptococcal surface adhesin - cshb NR2 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A8AXC5
- Elsewhere: RCSB PDB 6YZG · PDBe 6YZG · UniProt A8AXC5
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