Research workbench

SAM-IV riboswitch with SAM models, 4.8 Angstrom resolution

Analyse SAM-IV riboswitch with SAM models, 4.8 Angstrom resolution in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6WLR
Type: RNA
Length: 119 nucleotides
Chains: 1
Method: electron microscopy
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 4.8
Molecule: RNA (119-mer)
Pockets: 3 · best druggability 0.77

Structure

electron microscopy · resolution 4.8 · 1 distinct chain.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA (119-mer)	rna	119	—	—

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1061	0.77	0.80	53	empty
2	349	0.50	0.73	25	empty
3	134	0.40	0.75	14	empty

Compared structures

6WLR · SAM-IV riboswitch with SAM models, 4.8 ångström resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6WLR · PDBe 6WLR

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