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Methanococcoides burtonii cytochrome b5 domain protein (WP 011499504.1)

Analyse Methanococcoides burtonii cytochrome b5 domain protein (WP 011499504.1) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6VZ6
Type: protein
Length: 77 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.1
Source: Methanococcoides burtonii
Molecule: Cytochrome b5-domain protein
UniProt: Q12W16
Ligands: HEM
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · resolution 2.1 · 1 distinct chain · 22% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome b5-domain protein	protein	77	22% helix, 30% strand	Q12W16

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.56	0.84	19	HEM

Compared structures

6VZ6 · Methanococcoides burtonii cytochrome B5 domain protein (wp 011499504.1) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q12W16
Elsewhere: RCSB PDB 6VZ6 · PDBe 6VZ6 · UniProt Q12W16

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