Research workbench
Naegleria gruberi RNA ligase R149A mutant apo
Analyse Naegleria gruberi RNA ligase R149A mutant apo in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6VT4
- Type
- protein
- Length
- 337 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.16
- Source
- Naegleria gruberi
- Molecule
- RNA Ligase
- UniProt
- D2W2Z5
- Pockets
- 4 · best druggability 0.82
Structure
x-ray diffraction · resolution 2.16 · 1 distinct chain · 19% helix, 35% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | RNA Ligase | protein | 337 | 19% helix, 35% strand | D2W2Z5 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 658 | 0.82 | 0.86 | 77 | empty |
| 2 | 165 | 0.49 | 0.77 | 22 | empty |
| 3 | 66 | 0.31 | 0.75 | 15 | empty |
| 4 | 60 | 0.29 | 0.74 | 12 | empty |
Compared structures
- 6VT4 · Naegleria gruberi RNA ligase R149A mutant apo · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D2W2Z5
- Elsewhere: RCSB PDB 6VT4 · PDBe 6VT4 · UniProt D2W2Z5
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