Research workbench
Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (CD2) complexed with NF2657
Analyse Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 (CD2)… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6V7A
- Type
- protein
- Length
- 357 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.08742
- Source
- Danio rerio
- Molecule
- Hdac6 protein
- UniProt
- A7YT55
- Ligands
- QQG, K, ZN
Structure
x-ray diffraction · resolution 2.08742 · 1 distinct chain · 44% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hdac6 protein | protein | 357 | 44% helix, 14% strand | A7YT55 |
Ligands and binding sites
- QQG · N-hydroxy-4-[(1-methyl-1,2-dihydro-1'H-spiro[indole-3, 4'-piperidin]-1'-yl)methyl]benzamide · ligand · chains A
- K · Potassium ion · metal · 2 copies · chains A
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 6V7A · Crystal structure of danio rerio histone deacetylase 6 catalytic domain 2 (CD2) complexed… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7YT55
- Elsewhere: RCSB PDB 6V7A · PDBe 6V7A · UniProt A7YT55
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