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Variant W229D/F290W-19 of the last common ancestor of Gram-negative bacteria beta-lactamase class A (GNCA4)

Analyse Variant W229D/F290W-19 of the last common ancestor of Gram-negative bacteria… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6TWW
Type: protein
Length: 266 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.38
Source: synthetic construct
Molecule: Beta-Lactamase (GNCA4)
Ligands: MG, NA
Pockets: 2 · best druggability 0.48

Structure

x-ray diffraction · resolution 1.38 · 1 distinct chain · 44% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-Lactamase (GNCA4)	protein	266	44% helix, 17% strand	—

Ligands and binding sites

MG · Magnesium ion · metal · chains A
NA · Sodium ion · metal · chains A
FMT · Formic acid · additive · 6 copies · chains A
ACT · Acetate ion · additive · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	66	0.48	0.84	20	ACT
2	56	0.31	0.77	17	GOL

Compared structures

6TWW · Variant W229D/F290W-19 of the last common ancestor of gram-negative bacteria… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 6TWW · PDBe 6TWW

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