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Crystal structure of wild type EndoBT-3987 from Bacteroides thetaiotamicron VPI-5482

Analyse Crystal structure of wild type EndoBT-3987 from Bacteroides thetaiotamicron… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6T8I
Type: protein
Length: 434 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.4
Source: Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 /…
Molecule: Endo-beta-N-acetylglucosaminidase F1
UniProt: Q8A0N4
Pockets: 4 · best druggability 0.76

Structure

x-ray diffraction · resolution 1.4 · 1 distinct chain · 25% helix, 31% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endo-beta-N-acetylglucosaminidase F1	protein	434	25% helix, 31% strand	Q8A0N4

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	563	0.76	0.83	49	empty
2	319	0.64	0.80	50	empty
3	238	0.59	0.79	27	empty
4	87	0.35	0.74	20	empty

Compared structures

6T8I · Crystal structure of wild type endobt-3987 from bacteroides thetaiotamicron vpi-5482 · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8A0N4
Elsewhere: RCSB PDB 6T8I · PDBe 6T8I · UniProt Q8A0N4

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