Research workbench
The ssDNA-binding RNA polymerase cofactor Drc from Pseudomonas phage LUZ7
Analyse The ssDNA-binding RNA polymerase cofactor Drc from Pseudomonas phage LUZ7 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6QLC
- Type
- protein
- Length
- 82 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.2
- Source
- Pseudomonas phage LUZ7
- Molecule
- ssDNA binding RNA Polymerase cofactor
- UniProt
- C8ZKB3
- Ligands
- PO4
- Pockets
- 1 · best druggability 0.36
Structure
x-ray diffraction · resolution 2.2 · 1 distinct chain · 33% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ssDNA binding RNA Polymerase cofactor | protein | 82 | 33% helix, 23% strand | C8ZKB3 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 103 | 0.36 | 0.74 | 20 | empty |
Compared structures
- 6QLC · The ssdna-binding RNA polymerase cofactor drc from pseudomonas phage LUZ7 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C8ZKB3
- Elsewhere: RCSB PDB 6QLC · PDBe 6QLC · UniProt C8ZKB3
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