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A high-resolution crystal structure of NocB thioesterase domain from Nocardicin cluster

Analyse A high-resolution crystal structure of NocB thioesterase domain from Nocardicin… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6OJC
Type: protein
Length: 222 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.94
Source: Nocardia uniformis subsp. tsuyamanensis
Molecule: NocB
UniProt: Q5J1Q6
Ligands: SO4
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · resolution 1.94 · 1 distinct chain · 39% helix, 17% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	NocB	protein	222	39% helix, 17% strand	Q5J1Q6

Ligands and binding sites

SO4 · Sulfate ion · ion · 6 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	265	0.55	0.76	32	GOL

Compared structures

6OJC · A high-resolution crystal structure of nocb thioesterase domain from nocardicin cluster · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5J1Q6
Elsewhere: RCSB PDB 6OJC · PDBe 6OJC · UniProt Q5J1Q6

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