Research workbench
Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51)
Analyse Crystal structure of green fluorescent protein (GFP); S65T, Y66(3-ClY); ih… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6OFL
- Type
- protein
- Length
- 456 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.25
- Source
- Aequorea victoria
- Molecule
- Green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51)
- Pockets
- 8 · best druggability 0.77
Structure
x-ray diffraction · resolution 1.25 · 2 distinct chains · 11% helix, 51% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51) | protein | 229 | 11% helix, 51% strand | — |
| B | Green fluorescent protein (GFP); S65T, Y66(3-ClY); ih circular permutant (50-51) | protein | 227 | 11% helix, 51% strand | — |
Pockets
8 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 100 | 0.77 | 0.97 | 24 | empty |
| 2 | 100 | 0.77 | 0.97 | 27 | empty |
| 3 | 284 | 0.54 | 0.76 | 38 | empty |
| 4 | 292 | 0.53 | 0.75 | 48 | empty |
| 5 | 58 | 0.37 | 0.79 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 672 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6OFL · Crystal structure of green fluorescent protein (GFP); S65T, Y66(3- cly); ih circular… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6OFL · PDBe 6OFL
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