Research workbench
Xanthomonas citri PGM Apo-Dephospho at room temperature
Analyse Xanthomonas citri PGM Apo-Dephospho at room temperature in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NQE
- Type
- protein
- Length
- 448 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.85
- Source
- Xanthomonas axonopodis pv. citri (strain 306)
- Molecule
- Phosphoglucomutase
- UniProt
- Q8PGN7
- Ligands
- MG
- Pockets
- 3 · best druggability 0.67
Structure
x-ray diffraction · resolution 1.85 · 1 distinct chain · 40% helix, 22% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phosphoglucomutase | protein | 448 | 40% helix, 22% strand | Q8PGN7 |
Ligands and binding sites
- MG · Magnesium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 565 | 0.67 | 0.78 | 56 | empty |
| 2 | 53 | 0.34 | 0.78 | 10 | empty |
| 3 | 61 | 0.32 | 0.76 | 14 | empty |
Compared structures
- 6NQE · Xanthomonas citri pgm apo-dephospho at room temperature · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PGN7
- Elsewhere: RCSB PDB 6NQE · PDBe 6NQE · UniProt Q8PGN7
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.