Research workbench
Structure of Cyanothece McdB
Analyse Structure of Cyanothece McdB in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6NOY
- Type
- protein
- Length
- 318 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.46
- Source
- Cyanothece
- Molecule
- Maintenance of carboxysome positioning B protein, Mcsb
- UniProt
- B7KMS5
- Pockets
- 4 · best druggability 0.42
Structure
x-ray diffraction · resolution 3.46 · 2 distinct chains · 74% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| G, B | Maintenance of carboxysome positioning B protein, Mcsb | protein | 79 | 75% helix, 0% strand | B7KMS5 |
| H, A | Maintenance of carboxysome positioning B protein, Mcsb | protein | 80 | 73% helix, 0% strand | B7KMS5 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.42 | 0.73 | 20 | empty |
| 2 | 159 | 0.39 | 0.72 | 21 | empty |
| 3 | 147 | 0.38 | 0.72 | 23 | empty |
| 4 | 114 | 0.35 | 0.72 | 19 | empty |
Interfaces
4 interfaces between chains.
- G–H · 862 Ų buried · 7 hydrogen bonds · protein-protein
- A–B · 842 Ų buried · 5 hydrogen bonds · protein-protein
- H–B · 217 Ų buried · 2 hydrogen bonds · protein-protein
- G–B · 166 Ų buried · 6 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 modified (engineered).
Compared structures
- 6NOY · Structure of cyanothece mcdb · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B7KMS5
- Elsewhere: RCSB PDB 6NOY · PDBe 6NOY · UniProt B7KMS5
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