Research workbench
Crystal structure of selenomethionine-containing AcaB from uropathogenic E. coli
Analyse Crystal structure of selenomethionine-containing AcaB from uropathogenic E. coli in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6N8A
- Type
- protein
- Length
- 387 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.4011
- Source
- Escherichia coli
- Molecule
- transcription regulator AcaB
- UniProt
- C4NVV6
- Ligands
- CL
- Pockets
- 2 · best druggability 0.48
Structure
x-ray diffraction · resolution 3.4011 · 2 distinct chains · 70% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | transcription regulator AcaB | protein | 193 | 70% helix, 8% strand | C4NVV6 |
| B | transcription regulator AcaB | protein | 194 | 70% helix, 8% strand | C4NVV6 |
Ligands and binding sites
- CL · Chloride ion · ion · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 156 | 0.48 | 0.77 | 19 | empty |
| 2 | 84 | 0.32 | 0.74 | 20 | empty |
Interfaces
1 interface between chains.
- A–B · 444 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 6N8A · Crystal structure of selenomethionine-containing acab from uropathogenic E. COLI · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C4NVV6
- Elsewhere: RCSB PDB 6N8A · PDBe 6N8A · UniProt C4NVV6
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