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MicroED structure of lysozyme at 1.73A determained using crystal lamellas prepared by focused ion beam milling

Analyse MicroED structure of lysozyme at 1.73A determained using crystal lamellas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6LAV
Type: protein
Length: 129 residues
Chains: 1
Method: electron crystallography
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.73
Source: Gallus gallus
Molecule: Lysozyme C
EC: 3.2.1.17
UniProt: P00698
Pockets: 1 · best druggability 0.36

Structure

electron crystallography · resolution 1.73 · 1 distinct chain · 41% helix, 11% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lysozyme C (EC 3.2.1.17)	protein	129	41% helix, 11% strand	P00698

Ligands and binding sites

ACT · Acetate ion · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.36	0.75	17	ACT

Modifications

Observed in the structure: 4 disulfide (disulfide).

Compared structures

6LAV · Microed structure of lysozyme at 1.73A determained using crystal lamellas prepared by… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00698
Elsewhere: RCSB PDB 6LAV · PDBe 6LAV · UniProt P00698

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