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Structure of Amuc_1100 without transmembrane region from Akkermansia muciniphila

Analyse Structure of Amuc_1100 without transmembrane region from Akkermansia muciniphila in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6KNY
Type: protein
Length: 363 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.1
Source: Akkermansia muciniphila (strain ATCC BAA-835 / Muc)
Molecule: Protein Amuc_1100
UniProt: B2UR41
Pockets: 2 · best druggability 0.55

Structure

x-ray diffraction · resolution 2.1 · 2 distinct chains · 44% helix, 23% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein Amuc_1100	protein	173	42% helix, 24% strand	B2UR41
B	Protein Amuc_1100	protein	190	45% helix, 23% strand	B2UR41

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	241	0.55	0.77	22	empty
2	177	0.54	0.79	27	empty

Interfaces

1 interface between chains.

A–B · 1023 Å² buried · 16 hydrogen bonds · protein-protein

Compared structures

6KNY · Structure of AMUC_1100 without transmembrane region from akkermansia muciniphila · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B2UR41
Elsewhere: RCSB PDB 6KNY · PDBe 6KNY · UniProt B2UR41

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