Research workbench
Dimeric Shewanella violacea cytochrome c5
Analyse Dimeric Shewanella violacea cytochrome c5 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K7C
- Type
- protein
- Length
- 152 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.15
- Source
- Shewanella violacea
- Molecule
- Soluble cytochrome cA
- UniProt
- Q9RHJ6
- Ligands
- HEC, NO3
- Pockets
- 1 · best druggability 0.76
Structure
x-ray diffraction · resolution 1.15 · 1 distinct chain · 54% helix, 3% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C | Soluble cytochrome cA | protein | 76 | 54% helix, 3% strand | Q9RHJ6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 535 | 0.76 | 0.83 | 62 | HEC |
Interfaces
1 interface between chains.
- A–C · 1431 Ų buried · 15 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 4 cofactor, 2 disulfide (heme c attachment, disulfide).
Compared structures
- 6K7C · Dimeric shewanella violacea cytochrome C5 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9RHJ6
- Elsewhere: RCSB PDB 6K7C · PDBe 6K7C · UniProt Q9RHJ6
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