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Crystal structure of Saccharomyces cerevisiae single domain sulfurtranferase RDL2

Analyse Crystal structure of Saccharomyces cerevisiae single domain sulfurtranferase… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6K6R
Type: protein
Length: 246 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.471
Source: Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Molecule: Thiosulfate sulfurtransferase RDL2, mitochondrial
EC: 2.8.1.1
UniProt: Q08742
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · resolution 2.471 · 1 distinct chain · 36% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, D	Thiosulfate sulfurtransferase RDL2, mitochondrial (EC 2.8.1.1)	protein	123	36% helix, 18% strand	Q08742

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	170	0.56	0.81	24	empty

Interfaces

1 interface between chains.

A–D · 465 Å² buried · 4 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 2 modified (oxidation).

Compared structures

6K6R · Crystal structure of saccharomyces cerevisiae single domain sulfurtranferase RDL2 · the same entry in another collection · chain A against A, TM-score 1.00
Q08742 · AlphaFold monomer V2.0 prediction for thiosulfate sulfurtransferase RDL2, mitochondrial… · a predicted model of the same protein · chain A against A, TM-score 0.95

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q08742
Elsewhere: RCSB PDB 6K6R · PDBe 6K6R · UniProt Q08742

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