Research workbench
Structure of multicopper oxidase mutant
Analyse Structure of multicopper oxidase mutant in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6K3D
- Type
- protein
- Length
- 433 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.919
- Source
- Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC…
- Molecule
- Multicopper oxidase
- UniProt
- Q8ZWA8
- Ligands
- C2O, CU
- Pockets
- 3 · best druggability 0.52
Structure
x-ray diffraction · resolution 1.919 · 1 distinct chain · 7% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Multicopper oxidase | protein | 433 | 7% helix, 47% strand | Q8ZWA8 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 138 | 0.52 | 0.80 | 22 | empty |
| 2 | 113 | 0.46 | 0.79 | 28 | empty |
| 3 | 63 | 0.35 | 0.77 | 15 | empty |
Compared structures
- 6K3D · Structure of multicopper oxidase mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8ZWA8
- Elsewhere: RCSB PDB 6K3D · PDBe 6K3D · UniProt Q8ZWA8
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