Research workbench
SspB crystal structure
Analyse SspB crystal structure in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JUF
- Type
- protein
- Length
- 684 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.587
- Source
- Streptomyces clavuligerus (strain ATCC 27064 / DSM 738 / JCM 4710 / NBRC 13307…
- Molecule
- SspB protein
- UniProt
- B5GPM3
- Pockets
- 14 · best druggability 0.77
Structure
x-ray diffraction · resolution 1.587 · 2 distinct chains · 50% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | SspB protein | protein | 340 | 49% helix, 12% strand | B5GPM3 |
| A | SspB protein | protein | 344 | 50% helix, 12% strand | B5GPM3 |
Pockets
14 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.77 | 0.97 | 23 | empty |
| 2 | 372 | 0.67 | 0.81 | 47 | empty |
| 3 | 221 | 0.63 | 0.82 | 31 | empty |
| 4 | 173 | 0.57 | 0.81 | 33 | empty |
| 5 | 257 | 0.50 | 0.74 | 39 | empty |
Interfaces
1 interface between chains.
- B–A · 1347 Ų buried · 22 hydrogen bonds · protein-protein
Compared structures
- 6JUF · Sspb crystal structure · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt B5GPM3
- Elsewhere: RCSB PDB 6JUF · PDBe 6JUF · UniProt B5GPM3
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