Research workbench
Radiation damage in Aspergillus oryzae pro-tyrosinase oxygen-bound C92A/H103F mutant
Analyse Radiation damage in Aspergillus oryzae pro-tyrosinase oxygen-bound C92A/H103F… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JUD
- Type
- protein
- Length
- 1,084 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.56
- Source
- Aspergillus oryzae
- Molecule
- Tyrosinase
- EC
- 1.14.18.1
- UniProt
- A0A1S9DK56
- Ligands
- CU, PER
- Pockets
- 14 · best druggability 0.77
Structure
x-ray diffraction · resolution 1.56 · 2 distinct chains · 36% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Tyrosinase (EC 1.14.18.1) | protein | 533 | 36% helix, 17% strand | A0A1S9DK56 |
| B | Tyrosinase (EC 1.14.18.1) | protein | 551 | 36% helix, 17% strand | A0A1S9DK56 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
14 pockets found on a 1 Å grid, 6 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 105 | 0.77 | 0.97 | 28 | empty |
| 2 | 99 | 0.75 | 0.96 | 22 | empty |
| 3 | 809 | 0.70 | 0.76 | 86 | empty |
| 4 | 52 | 0.69 | 0.98 | 19 | empty |
| 5 | 54 | 0.68 | 0.97 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 1535 Ų buried · 12 hydrogen bonds · protein-protein
Compared structures
- 6JUD · Radiation damage in aspergillus oryzae pro-tyrosinase oxygen-bound C92A/H103F mutant · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A1S9DK56
- Elsewhere: RCSB PDB 6JUD · PDBe 6JUD · UniProt A0A1S9DK56
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