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CJP38, a beta-1,3-glucanase and allergen of Cryptomeria japonica pollen

Analyse CJP38, a beta-1,3-glucanase and allergen of Cryptomeria japonica pollen in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6JMS
Type: protein
Length: 320 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.5
Source: Cryptomeria japonica
Molecule: Pollen allergen CJP38
EC: 3.2.1.39
UniProt: Q588B8
Pockets: 3 · best druggability 0.53

Structure

x-ray diffraction · resolution 1.5 · 1 distinct chain · 41% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pollen allergen CJP38 (EC 3.2.1.39)	protein	320	41% helix, 19% strand	Q588B8

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	306	0.53	0.74	33	EDO
2	79	0.43	0.80	22	empty
3	78	0.38	0.77	17	empty

Compared structures

6JMS · CJP38, a beta-1,3-glucanase and allergen of cryptomeria japonica pollen · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q588B8
Elsewhere: RCSB PDB 6JMS · PDBe 6JMS · UniProt Q588B8

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