Research workbench
Crystal structure of tetrameric PepTSo2 in P4212 space group
Analyse Crystal structure of tetrameric PepTSo2 in P4212 space group in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6JKC
- Type
- protein
- Length
- 462 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 3.5
- Source
- Shewanella oneidensis (strain MR-1)
- Molecule
- Proton:oligopeptide symporter POT family
- UniProt
- Q8EHE6
- Pockets
- 5 · best druggability 0.77
Structure
x-ray diffraction · resolution 3.5 · 1 distinct chain · 79% helix, 2% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Proton:oligopeptide symporter POT family | protein | 462 | 79% helix, 2% strand | Q8EHE6 |
Pockets
5 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 964 | 0.77 | 0.79 | 53 | empty |
| 2 | 291 | 0.63 | 0.80 | 37 | empty |
| 3 | 130 | 0.42 | 0.75 | 26 | empty |
| 4 | 105 | 0.38 | 0.74 | 18 | empty |
| 5 | 60 | 0.34 | 0.77 | 12 | empty |
Compared structures
- 6JKC · Crystal structure of tetrameric PEPTSO2 in P4212 space group · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EHE6
- Elsewhere: RCSB PDB 6JKC · PDBe 6JKC · UniProt Q8EHE6
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.