Research workbench
Structure of 3,6-anhydro-L-galactose Dehydrogenase
Analyse Structure of 3,6-anhydro-L-galactose Dehydrogenase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6J75
- Type
- protein
- Length
- 1,908 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.695
- Source
- Vibrio variabilis
- Molecule
- Aldehyde dehydrogenase A
- EC
- 1.2.1.22
- UniProt
- A0A090SK43
- Pockets
- 20 · best druggability 0.86
Structure
x-ray diffraction · resolution 2.695 · 1 distinct chain · 40% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Aldehyde dehydrogenase A (EC 1.2.1.22) | protein | 477 | 40% helix, 24% strand | A0A090SK43 |
Pockets
20 pockets found on a 1 Å grid, 19 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 581 | 0.86 | 0.91 | 69 | empty |
| 2 | 184 | 0.84 | 0.98 | 20 | empty |
| 3 | 378 | 0.84 | 0.92 | 73 | empty |
| 4 | 163 | 0.84 | 0.98 | 20 | empty |
| 5 | 325 | 0.82 | 0.92 | 52 | empty |
Interfaces
6 interfaces between chains.
- A–B · 2655 Ų buried · 50 hydrogen bonds · protein-protein
- C–D · 2565 Ų buried · 52 hydrogen bonds · protein-protein
- A–C · 1110 Ų buried · 11 hydrogen bonds · protein-protein
- B–D · 1083 Ų buried · 9 hydrogen bonds · protein-protein
- B–C · 1012 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 6J75 · Structure of 3,6-anhydro-L-galactose dehydrogenase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A090SK43
- Elsewhere: RCSB PDB 6J75 · PDBe 6J75 · UniProt A0A090SK43
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