Research workbench

Borrelia burgdorferi OspA via surface entropy reduction (form3)

Analyse Borrelia burgdorferi OspA via surface entropy reduction (form3) in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6J6C
Type: protein
Length: 246 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.6
Source: Borrelia burgdorferi (strain ATCC 35210 / B31 / CIP 102532 / DSM 4680)
Molecule: Outer surface protein A
UniProt: P0CL66
Pockets: 2 · best druggability 0.30

Structure

x-ray diffraction · resolution 1.6 · 1 distinct chain · 3% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
O	Outer surface protein A	protein	246	3% helix, 54% strand	P0CL66

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	65	0.30	0.74	17	empty
2	70	0.29	0.73	17	empty

Compared structures

6J6C · Borrelia burgdorferi ospa via surface entropy reduction (FORM3) · the same entry in another collection · chain O against O, TM-score 1.00
P0CL66 · AlphaFold monomer V2.0 prediction for outer surface protein a (P0CL66) · a predicted model of the same protein · chain O against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P0CL66
Elsewhere: RCSB PDB 6J6C · PDBe 6J6C · UniProt P0CL66

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