Research workbench
Crystal structure of the zebrafish cap-specific adenosine methyltransferase
Analyse Crystal structure of the zebrafish cap-specific adenosine methyltransferase in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IRX
- Type
- protein
- Length
- 482 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2
- Source
- Danio rerio
- Molecule
- PDX1 C-terminal-inhibiting factor 1
- UniProt
- A0A0R4IKJ1
- Pockets
- 3 · best druggability 0.81
Structure
x-ray diffraction · resolution 2 · 1 distinct chain · 48% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | PDX1 C-terminal-inhibiting factor 1 | protein | 482 | 48% helix, 12% strand | A0A0R4IKJ1 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 826 | 0.81 | 0.84 | 93 | empty |
| 2 | 342 | 0.60 | 0.77 | 42 | empty |
| 3 | 56 | 0.28 | 0.74 | 12 | empty |
Modifications
Observed in the structure: 11 modified (engineered).
Compared structures
- 6IRX · Crystal structure of the zebrafish cap-specific adenosine methyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0R4IKJ1
- Elsewhere: RCSB PDB 6IRX · PDBe 6IRX · UniProt A0A0R4IKJ1
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