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Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution

Analyse Crystal structure of red fluorescent protein mCherry complexed with the… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6IR1
Type: protein
Length: 340 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.919
Source: Anaplasma marginale; Camelus bactrianus
Molecule: MCherry fluorescent protein; mCherry's nanobody LaM4
UniProt: X5DSL3
Pockets: 3 · best druggability 0.70

Structure

x-ray diffraction · resolution 1.919 · 2 distinct chains · 6% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MCherry fluorescent protein	protein	216	5% helix, 58% strand	X5DSL3
B	mCherry's nanobody LaM4	protein	124	7% helix, 47% strand	—

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	51	0.70	0.98	20	empty
2	88	0.52	0.84	19	empty
3	61	0.40	0.80	15	empty

Interfaces

1 interface between chains.

A–B · 796 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

6IR1 · Crystal structure of red fluorescent protein mcherry complexed with the nanobody LAM4 at… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt X5DSL3
Elsewhere: RCSB PDB 6IR1 · PDBe 6IR1 · UniProt X5DSL3

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