Research workbench
A Novel M23 Metalloprotease Pseudoalterin from Deep-sea
Analyse A Novel M23 Metalloprotease Pseudoalterin from Deep-sea in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6IK4
- Type
- protein
- Length
- 173 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.9
- Source
- Pseudoalteromonas sp. CF6-2
- Molecule
- Elastinolytic metalloprotease
- UniProt
- E7D102
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.41
Structure
x-ray diffraction · resolution 1.9 · 1 distinct chain · 2% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Elastinolytic metalloprotease | protein | 173 | 2% helix, 37% strand | E7D102 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.41 | 0.75 | 31 | GOL |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 6IK4 · A novel M23 metalloprotease pseudoalterin from deep-sea · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E7D102
- Elsewhere: RCSB PDB 6IK4 · PDBe 6IK4 · UniProt E7D102
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