Research workbench
Crystal structure of the head and coiled-coil domains of zebrafish CCDC61
Analyse Crystal structure of the head and coiled-coil domains of zebrafish CCDC61 in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6HXY
- Type
- protein
- Length
- 300 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.9
- Source
- Danio rerio
- Molecule
- Coiled-coil domain-containing protein 61
- UniProt
- Q08CF3
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · resolution 2.9 · 2 distinct chains · 35% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Coiled-coil domain-containing protein 61 | protein | 147 | 35% helix, 39% strand | Q08CF3 |
| B | Coiled-coil domain-containing protein 61 | protein | 153 | 35% helix, 37% strand | Q08CF3 |
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 137 | 0.52 | 0.80 | 18 | empty |
| 2 | 103 | 0.46 | 0.80 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 936 Ų buried · 4 hydrogen bonds · protein-protein
Compared structures
- 6HXY · Crystal structure of the head and coiled-coil domains of zebrafish CCDC61 · the same entry in another collection · chain A against A, TM-score 1.00
- Q08CF3 · AlphaFold monomer V2.0 prediction for centrosomal protein CCDC61 (Q08CF3) · a predicted model of the same protein · chain B against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q08CF3
- Elsewhere: RCSB PDB 6HXY · PDBe 6HXY · UniProt Q08CF3
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