Research workbench

Crystal structure of psychrophilic phosphoglycerate kinase from Pseudomonas TACII18 in complex with 3-phosphoglycerate

Analyse Crystal structure of psychrophilic phosphoglycerate kinase from Pseudomonas… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HXE
Type: protein
Length: 386 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.1
Source: Pseudomonas sp. 'TAC II 18'
Molecule: Phosphoglycerate kinase
EC: 2.7.2.3
UniProt: Q9RBS3
Ligands: 3PG
Pockets: 3 · best druggability 0.49

Structure

x-ray diffraction · resolution 2.1 · 1 distinct chain · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglycerate kinase (EC 2.7.2.3)	protein	386	43% helix, 18% strand	Q9RBS3

Ligands and binding sites

3PG · 3-phosphoglyceric acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	170	0.49	0.77	36	empty
2	53	0.27	0.75	16	empty
3	55	0.25	0.72	15	empty

Compared structures

6HXE · Crystal structure of psychrophilic phosphoglycerate kinase from pseudomonas TACII18 in… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9RBS3
Elsewhere: RCSB PDB 6HXE · PDBe 6HXE · UniProt Q9RBS3

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.