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Keap1 - inhibitor complex

Analyse Keap1 - inhibitor complex in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6HWS
Type
protein
Length
285 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.75
Source
Homo sapiens
Molecule
Kelch-like ECH-associated protein 1
UniProt
Q14145
Ligands
GX8, NA
Pockets
1 · best druggability 0.73

Structure

x-ray diffraction · resolution 1.75 · 1 distinct chain · 0% helix, 50% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AKelch-like ECH-associated protein 1protein2850% helix, 50% strandQ14145

Ligands and binding sites

  • GX8 · 2-[[4-[2-hydroxy-2-oxoethyl-(4-methoxyphenyl)sulfonyl-amino]-3-phenylmethoxy-phenyl]-(4-methoxyphenyl) sulfonyl-amino]ethanoic acid · ligand · chains A
  • NA · Sodium ion · metal · 7 copies · chains A
  • EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
16380.730.8053GX8

Compared structures

  • 6HWS · KEAP1 - inhibitor complex · the same entry in another collection · chain A against A, TM-score 1.00
  • Q14145 · AlphaFold monomer V2.0 prediction for kelch-like ech-associated protein 1 (Q14145) · a predicted model of the same protein · chain A against A, TM-score 1.00

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