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Crystal structure of the translation recovery factor Trf from Sulfolobus solfataricus

Analyse Crystal structure of the translation recovery factor Trf from Sulfolobus… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HTJ
Type: protein
Length: 237 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.65
Source: Sulfolobus solfataricus
Molecule: Nucleic-acid-binding protein containing a Zn-ribbon
UniProt: A0A0E3M9E8
Ligands: ZN
Pockets: 1 · best druggability 0.76

Structure

x-ray diffraction · resolution 1.65 · 2 distinct chains · 11% helix, 50% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleic-acid-binding protein containing a Zn-ribbon	protein	119	11% helix, 50% strand	A0A0E3M9E8
B	Nucleic-acid-binding protein containing a Zn-ribbon	protein	118	11% helix, 50% strand	A0A0E3M9E8

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1085	0.76	0.78	61	empty

Interfaces

1 interface between chains.

A–B · 854 Å² buried · 11 hydrogen bonds · protein-protein

Compared structures

6HTJ · Crystal structure of the translation recovery factor trf from sulfolobus solfataricus · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A0E3M9E8
Elsewhere: RCSB PDB 6HTJ · PDBe 6HTJ · UniProt A0A0E3M9E8

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