Research workbench

Crystal structure of the type III effector protein AvrRpt2 from Erwinia amylovora, a C70 family cysteine protease

Analyse Crystal structure of the type III effector protein AvrRpt2 from Erwinia… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6HQZ
Type: protein
Length: 308 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 1.8
Source: Erwinia amylovora
Molecule: AvrRpt2
UniProt: A0A2U7NR52
Pockets: 2 · best druggability 0.61

Structure

x-ray diffraction · resolution 1.8 · 1 distinct chain · 32% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	AvrRpt2	protein	154	32% helix, 25% strand	A0A2U7NR52

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	277	0.61	0.80	29	empty
2	110	0.40	0.76	25	empty

Interfaces

1 interface between chains.

A–B · 358 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

6HQZ · Crystal structure of the type III effector protein AVRRPT2 from erwinia amylovora, a C70… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0A2U7NR52
Elsewhere: RCSB PDB 6HQZ · PDBe 6HQZ · UniProt A0A2U7NR52

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.