GL1X · GenesisL1 explorer

Research workbench

Molybdenum storage protein- H156A

Analyse Molybdenum storage protein- H156A in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB
6H6W
Type
protein
Length
512 residues
Chains
2
Method
x-ray diffraction
Collection
MolNFT v2 / PDB Bank
Contract
0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner
0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution
1.9
Source
Azotobacter vinelandii
Molecule
Molybdenum storage protein subunit beta; Molybdenum storage protein subunit alpha
UniProt
P84253, P84308
Ligands
ATP, FUQ, 8M0, MO, MG, PO4, MOO
Pockets
6 · best druggability 0.77

Structure

x-ray diffraction · resolution 1.9 · 2 distinct chains · 44% helix, 16% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
BMolybdenum storage protein subunit betaprotein26844% helix, 16% strandP84253
AMolybdenum storage protein subunit alphaprotein24444% helix, 17% strandP84308

Ligands and binding sites

  • ATP · Adenosine-5'-triphosphate · ligand · 2 copies · chains B, A
  • FUQ · Mo5 Cluster · ligand · 2 copies · chains B, A
  • 8M0 · bis(mu4-oxo)-tetrakis(mu3-oxo)-hexakis(mu2-oxo)-hexadecaoxo-octamolybdenum (VI) · ligand · chains A
  • MO · Molybdenum atom · metal · 2 copies · chains A
  • MG · Magnesium ion · metal · chains A
  • PO4 · Phosphate ion · ion · chains B
  • MOO · Molybdate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
12570.770.9039ATP, MG
23510.640.7938ATP
3880.450.8022FUQ
41580.440.7524empty
5750.380.7819empty

Interfaces

1 interface between chains.

  • B–A · 2362 Ų buried · 28 hydrogen bonds · protein-protein

Compared structures

  • 6H6W · Molybdenum storage protein- H156A · the same entry in another collection · chain A against A, TM-score 1.00
  • P84308 · AlphaFold monomer V2.0 prediction for molybdenum storage protein subunit alpha (P84308) · a predicted model of the same protein · chain A against A, TM-score 1.00
  • P84253 · AlphaFold monomer V2.0 prediction for molybdenum storage protein subunit beta (P84253) · a predicted model of the same protein · chain B against A, TM-score 0.98

Analyse

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.