Research workbench
LtgA disordered Helix
Analyse LtgA disordered Helix in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H5F
- Type
- protein
- Length
- 563 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2
- Source
- Neisseria meningitidis NM422
- Molecule
- Putative soluble lytic murein transglycosylase
- UniProt
- Q9JXP1
- Pockets
- 5 · best druggability 0.51
Structure
x-ray diffraction · resolution 2 · 1 distinct chain · 66% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative soluble lytic murein transglycosylase | protein | 563 | 66% helix, 1% strand | Q9JXP1 |
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 286 | 0.51 | 0.74 | 40 | empty |
| 2 | 179 | 0.46 | 0.75 | 29 | empty |
| 3 | 123 | 0.39 | 0.75 | 25 | empty |
| 4 | 90 | 0.39 | 0.77 | 15 | empty |
| 5 | 59 | 0.28 | 0.74 | 17 | empty |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 6H5F · Ltga disordered helix · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9JXP1
- Elsewhere: RCSB PDB 6H5F · PDBe 6H5F · UniProt Q9JXP1
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