Research workbench
Crystal Structure of protein MJ1004 from Mathanocaldococcus jannaschii
Analyse Crystal Structure of protein MJ1004 from Mathanocaldococcus jannaschii in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6H1W
- Type
- protein
- Length
- 415 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.394
- Source
- Methanocaldococcus jannaschii DSM 2661
- Molecule
- MJ1004
- UniProt
- Q58410
- Pockets
- 4 · best druggability 0.79
Structure
x-ray diffraction · resolution 2.394 · 2 distinct chains · 55% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | MJ1004 | protein | 205 | 55% helix, 17% strand | Q58410 |
| B | MJ1004 | protein | 210 | 54% helix, 17% strand | Q58410 |
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 945 | 0.79 | 0.80 | 54 | empty |
| 2 | 517 | 0.75 | 0.83 | 57 | empty |
| 3 | 221 | 0.60 | 0.81 | 24 | empty |
| 4 | 200 | 0.53 | 0.77 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 2303 Ų buried · 9 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 6H1W · Crystal structure of protein MJ1004 from mathanocaldococcus jannaschii · the same entry in another collection · chain A against A, TM-score 1.00
- Q58410 · AlphaFold monomer V2.0 prediction for uncharacterized protein MJ1004 (Q58410) · a predicted model of the same protein · chain A against A, TM-score 0.75
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58410
- Elsewhere: RCSB PDB 6H1W · PDBe 6H1W · UniProt Q58410
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