Research workbench
Characterization of extracellular matrix binding protein- (Embp)-mediated Staphylococcus epidermidis adherence to fibronectin
Analyse Characterization of extracellular matrix binding protein- (Embp)-mediated… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GV8
- Type
- protein
- Length
- 157 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.394
- Source
- Staphylococcus epidermidis
- Molecule
- Hyperosmolarity resistance protein Emb
- UniProt
- A0A2G7I4G8
- Pockets
- 2 · best druggability 0.39
Structure
x-ray diffraction · resolution 1.394 · 1 distinct chain · 76% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hyperosmolarity resistance protein Emb | protein | 157 | 76% helix, 1% strand | A0A2G7I4G8 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 83 | 0.39 | 0.77 | 17 | empty |
| 2 | 96 | 0.35 | 0.74 | 24 | empty |
Compared structures
- 6GV8 · Characterization of extracellular matrix binding protein- (embp)- mediated staphylococcus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A2G7I4G8
- Elsewhere: RCSB PDB 6GV8 · PDBe 6GV8 · UniProt A0A2G7I4G8
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