Research workbench
Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group R3
Analyse Racemic crystal structure of A-DNA duplex formed from d(CCCGGG) in space group… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6GN2
- Type
- DNA
- Length
- 24 nucleotides
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.48
- Molecule
- DNA (5'-D(*CP*CP*CP*GP*GP*G)-3')
- Ligands
- TMO
Structure
x-ray diffraction · resolution 2.48 · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | DNA (5'-D(*CP*CP*CP*GP*GP*G)-3') | dna | 6 | — | — |
Ligands and binding sites
- TMO · trimethylamine oxide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
6 interfaces between chains.
- A–B · 328 Ų buried · 32 hydrogen bonds · nucleic-nucleic
- C–D · 325 Ų buried · 33 hydrogen bonds · nucleic-nucleic
- B–C · 150 Ų buried · 3 hydrogen bonds · nucleic-nucleic
- A–D · 134 Ų buried · 2 hydrogen bonds · nucleic-nucleic
- B–D · 122 Ų buried · 3 hydrogen bonds · nucleic-nucleic
Compared structures
- 6GN2 · Racemic crystal structure of a-DNA duplex formed from D(CCCGGG) in space group R3 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6GN2 · PDBe 6GN2
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