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Solution NMR structure of the major type IV pilin PpdD from enterohemorrhagic Escherichia coli (EHEC)

Analyse Solution NMR structure of the major type IV pilin PpdD from enterohemorrhagic… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6GMS
Type: protein
Length: 132 residues
Chains: 1
Method: solution nmr
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: NOT
Source: Escherichia coli O157:H7
Molecule: Prepilin peptidase-dependent protein D
UniProt: Q8X974
Pockets: 1 · best druggability 0.64

Structure

solution nmr · resolution NOT · 1 distinct chain · 33% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Prepilin peptidase-dependent protein D	protein	132	33% helix, 16% strand	Q8X974

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	104	0.64	0.88	22	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

6GMS · Solution NMR structure of the major type IV pilin ppdd from enterohemorrhagic escherichia… · the same entry in another collection · chain A against A, TM-score 1.00

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Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8X974
Elsewhere: RCSB PDB 6GMS · PDBe 6GMS · UniProt Q8X974

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