Research workbench
Anti-CRISPR AcrIIa6 cubic form
Analyse Anti-CRISPR AcrIIa6 cubic form in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6EYY
- Type
- protein
- Length
- 366 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 2.5
- Source
- Streptococcus phage 73
- Molecule
- AcrIIa6
- Pockets
- 4 · best druggability 0.64
Structure
x-ray diffraction · resolution 2.5 · 1 distinct chain · 51% helix, 17% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | AcrIIa6 | protein | 183 | 51% helix, 17% strand | — |
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 172 | 0.64 | 0.85 | 23 | empty |
| 2 | 345 | 0.55 | 0.75 | 34 | empty |
| 3 | 339 | 0.55 | 0.75 | 34 | empty |
| 4 | 51 | 0.27 | 0.75 | 12 | empty |
Interfaces
1 interface between chains.
- A–B · 1338 Ų buried · 19 hydrogen bonds · protein-protein
Compared structures
- 6EYY · Anti-CRISPR ACRIIA6 cubic form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 6EYY · PDBe 6EYY
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