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Crystal structure of chalcone synthase from Equisetum arvense
Analyse Crystal structure of chalcone synthase from Equisetum arvense in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 6DX9
- Type
- protein
- Length
- 783 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v2 / PDB Bank
- Contract
- 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
- Owner
- 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
- Resolution
- 1.5
- Source
- Equisetum arvense
- Molecule
- Chalcone synthase
- EC
- 2.3.1.74
- UniProt
- Q9MBB1
- Pockets
- 6 · best druggability 0.67
Structure
x-ray diffraction · resolution 1.5 · 2 distinct chains · 42% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chalcone synthase (EC 2.3.1.74) | protein | 392 | 41% helix, 23% strand | Q9MBB1 |
| B | Chalcone synthase (EC 2.3.1.74) | protein | 391 | 43% helix, 23% strand | Q9MBB1 |
Pockets
6 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 258 | 0.67 | 0.83 | 36 | empty |
| 2 | 274 | 0.66 | 0.82 | 31 | empty |
| 3 | 279 | 0.59 | 0.79 | 32 | empty |
| 4 | 294 | 0.57 | 0.77 | 36 | empty |
| 5 | 62 | 0.36 | 0.78 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 2991 Ų buried · 59 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 modified (oxidation).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9MBB1
- Elsewhere: RCSB PDB 6DX9 · PDBe 6DX9 · UniProt Q9MBB1
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