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Cronobacter turicensis RpfR quorum-sensing receptor PAS domain in complex with BDSF

Analyse Cronobacter turicensis RpfR quorum-sensing receptor PAS domain in complex with… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 6DGJ
Type: protein
Length: 102 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v2 / PDB Bank
Contract: 0xd58B01f6C18086e5202cdC5D7Ad3E41790360102
Owner: 0xF4e1AA6f26B7DA48EeAD9B24a97927303eeA07b8
Resolution: 2.294
Source: Cronobacter turicensis (strain DSM 18703 / LMG 23827 / z3032)
Molecule: RpfR
UniProt: C9XTL5
Ligands: GEY
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · resolution 2.294 · 1 distinct chain · 29% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RpfR	protein	102	29% helix, 40% strand	C9XTL5

Ligands and binding sites

GEY · (2Z)-dodec-2-enoic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	114	0.79	0.97	25	GEY

Compared structures

6DGJ · Cronobacter turicensis rpfr quorum-sensing receptor pas domain in complex with bdsf · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C9XTL5
Elsewhere: RCSB PDB 6DGJ · PDBe 6DGJ · UniProt C9XTL5

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